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A compilation and categorization of next-generation sequencing resources

PeakSeq

Tool namePeakSeq
URLhttp://info.gersteinlab.org/PeakSeq
Important featuresIt is used to identify and rank the peak regions in chip seq analysis.
CitationsRozowsky J, Euskirchen G, Auerbach RK, Zhang ZD, Gibson T, Bjornson R,Carriero N, Snyder M, Gerstein MB. PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. Nat Biotechnol. 2009 Jan;27(1):66-75. Epub 2009 Jan 4. PubMed PMID: 19122651; PubMed Central PMCID: PMC2924752.
Year of publication2009
Rank by usage frequency96
Comments
FunctionChIP seq analysis
CategoryFree, Downloadable
License
Status
Input file format
Output file format
Operating system
Operating languageC and Perl
PlatformIllumina/Solexa
Maintained by
Downloadable file format
Submission file format

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